PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g062760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 294aa    MW: 34011.9 Da    PI: 7.1818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g062760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52e-12451281197
                     HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++++ lp  f++++ +  + ++++t+++ +s++ W+++++ ++ s+ ++l++GWk+ vk+ ++ e  f+vF++dg++ f  ++ v+
  Csa04g062760.1  45 FTEDNMNLP--FVSDNTSGMHLPQKVTVKSvSSSNIWRMEMTTNGESDDVFLRDGWKKIVKDENITEPVFLVFEFDGSRLF--HFCVY 128
                     455555554..88888555568899*****7777*******99*******************************9986666..66655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-1436130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1136130IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-737128No hitNo description
SMARTSM010199.8E-837131IPR003340B3 DNA binding domain
PROSITE profilePS508639.82737131IPR003340B3 DNA binding domain
PfamPF023622.5E-948127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-6196291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-7197277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYMYSPGVGC IIISLSLSLS TEKMKTQGSN VDLIQKFFRV YIPNFTEDNM NLPFVSDNTS  60
GMHLPQKVTV KSVSSSNIWR MEMTTNGESD DVFLRDGWKK IVKDENITEP VFLVFEFDGS  120
RLFHFCVYEH SSMCKRTRFL MEKEVIDVES EEEIEDDDES TKEFDESPRR KERGGTSRQR  180
LKTDSHKVDE YLDDELNPSF PVDMTQSRST RIPSLLIKDY NLTFPNLVTV RDKIGKLKRK  240
ILVSKNKSVY LSGLRSFIRR NHVKKGDQMF CELKMVDGYQ GLVHEIKVHI IKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506425.10.0PREDICTED: B3 domain-containing protein REM22 isoform X1
SwissprotQ9STF11e-129REM22_ARATH; B3 domain-containing protein REM22
TrEMBLR0FY441e-140R0FY44_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50008491e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-117B3 family protein